Image-based Profiling Handbook

Preface

Getting Started

1. Introduction

Configuration

2. Configure Environment for Full Profiling Pipeline
3. Setup Images
4. Run each CellProfiler step
5. Create Profiles

Appendix

Appendix

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Preface

Preface¶

This is a handbook for processing image-based profiling datasets using CellProfiler and pycytominer

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1. Introduction

By Beth Cimini, Tim Becker, Shantanu Singh, Gregory Way, Hamdah Abbasi
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